PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 283aa    MW: 31894.3 Da    PI: 4.4693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1913103199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   + ++s  + +p +f+e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk g+f++F +dg+++f   v+
  XP_009103858.1  13 FFKVF--LSETASESMAIPMSFIEHLEDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKHGEFLTFVYDGSHTF--EVS 99 
                     88999..666777779*******666655..889****************..99998899************************998888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf +
  XP_009103858.1 100 VFGR 103
                     8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-257106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-239106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.88811104IPR003340B3 DNA binding domain
CDDcd100174.08E-2011101No hitNo description
PfamPF023628.0E-1713102IPR003340B3 DNA binding domain
SMARTSM010192.2E-2313104IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-9186268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-6186268IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.36189278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSESEEDVDL PRFFKVFLSE TASESMAIPM SFIEHLEDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KHGEFLTFVY DGSHTFEVSV FGRSGCKEIR AEVETVELSD  120
ANSDKEEEDS SVVADSNEEE EEGDDDSSFI AGEDDEVSQS LSHVDSDDTV SNAEVVAGFS  180
NLEVESNPCF TTTLKNRIYE LLIPANVVKE HGLTFCDRIK YIDGEGIMHG AKGKWSDDRI  240
CFKGWDRICR RNRLKERDTV HCEMLHIRNK VHTIKITVTR GRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-181210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-127AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103858.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-103REM20_ARATH; B3 domain-containing protein REM20
TrEMBLM4CFZ80.0M4CFZ8_BRARP; Uncharacterized protein
STRINGBra003130.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-100B3 family protein